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Publications

2018

Bommert P, Whipple CJ. 2018. Grass inflorescence architecture and meristem determinacy. Seminars in Cell and Developmental Biology. 79:37-47.  doi:doi.org/10.1016/j.semcdb.2017.10.004

Klein H, Xiao Y, Conklin PA, Govindarajulu R, Kelley J, Scanlon MJ, Whipple CJ, Bartlett M. 2018. Bulked-Segregant Analysis Coupled to Whole Genome Sequencing (BSA-Seq) for Rapid Gene Cloning in Maize. G3: Genes Genomes Genetics. 8(11):3583-3592.  doi:doi.org/10.1534/g3.118.200499

2017

Sun X, Cahill J, Hautegem TV, Feys K, Whipple C, Novak O, Delbare S, Versteele C, De Block J, Demuynk K, et al. 2017. Altered expression of maize PLASTOCHRON1 enhances biomass and seed yield by extending cell division duration. Nature Communications.

Whipple CJ. 2017. Tansley Insight: Grass inflorescence architecture and evolution: the origin of novel signaling centers. New Phytologist. 2016(2):367-372.  doi:10.1111/nph.14538

2016

Kummer TA, Whipple CJ, Jensen JL. 2016. Prevalence and persistence of misconceptions in tree thinking. Journal of Microbiology and Biology Education.

Pickett B, Karlinsey S, Penrod C, Cormier M, Ebbert M, Shiozawa DK, Whipple CJ, Ridge PG. 2016. SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences. btw298.

Bartlett M, Thompson B, Brabazon H, Del Gizzi R, Zhang T, Whipple CJ. 2016. Evolutionary dynamics of floral homeotic transcription factor protein-protein interactions. Molecular Biology and Evolution. 33(6):1486-1501.  doi:10.1093/molbev/msw031

Yang CJ, Kursel LE, Studer AJ, Bartlett ME, Whipple CJ, Doebley JF. 2016. A gene for genetic background in zea mays: fine mapping enhancer of teosintebranched1.2 (etb1.2) to a YABBY class transcription factor. Genetics. 204(4):1573-1585.  doi:10.1534/genetics.116.194928

2015

Gallavotti A, Whipple CJ. 2015. Positional Cloning in Maize. Applications in Plant Sciences. 3(1):13.  doi:10.3732/apps.1400092

Bartlett ME, Williams SK, Taylor Z, DeBlasio S, Goldschmidt A, Hall DH, Schmidt RJ, Jackson DP, Whipple CJ. 2015. The maize PI/GLO ortholog Zmm16/sterile tassel silky ear1 (sts1) interacts with the zygomorphy and sex determination pathways in flower development.. The Plant Cell. 27:3081-3098.  doi:dx.doi.org/10.1105/tpc.15.00679

2013

Wills DM, Whipple CJ, Takuno S, Kursel LE, Shannon LM, Ross-Ibarra JJ, Doebley JF. 2013. From many, one: genetic control of profligacy during maize domestication. PLOS Genetics. 9(e1003604):1-13.  doi:10.1371/journal.pgen.1003604

Kellogg EA, Camera PS, Rudall P, Ladd P, Malcomber ST, Whipple CJ, Doust AN. 2013. Early inflorescence development in the grasses (Poaceae). Frontiers in Plant Science. 4:1-16.  doi:10.3389/fpls.2013.00250

Bartlett ME, Whipple CJ. 2013. Protein change in plant evolution: tracing one thread connecting molecular and phenotypic diversity. Frontiers in Plant Science. 4:1-16.  doi:10.3389/fpls.2013.00382

2012

Whipple CJ. 2012. Defining the plant germline: nature or nurture?. Science. 337(6092):301-302.

2011

Gallavotti A, Gaines C, Satnfield S, Whipple CJ, Kellogg EA, Malcomber S, Schmidt RJ. 2011. The BARREN STALK FASTIGIATE1 (BAF1) AT-hook transcription factor is required for the formation of maize ears. The Plant Cell. 23(3).

Whipple CJ, Kebrom TH, Weber AL, Yang F, Hall DH, Meeley RB, Schmidt RJ, Doebley J, Brutnell TP, Jackson DP. 2011. grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses. Proceedlings of the National Academy of Sciences USA.

2010

Whipple CJ, Hall DH, DeBlasio S, Shiobara FT, Schmidt RJ, Jackson DP. 2010. A conserved mechanism of bract suppression in the grass family. The Plant Cell. 22(3):565-578.

Chuck G, Whipple CJ, Jackson D, Hake S. 2010. The maize SBP-box transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries. Development. 137(8):1243-1250.

2009

Thompson BE, Bartling L, Whipple CJ, Hall DH, Sakai H, Hake S, Schmidt R. 2009. bearded-ear Encodes a MADS Box Transcription Factor. The Plant Cell. 21:2578-2590.

2007

Whipple CJ, Zanis M, Kellogg EA, Schmidt RJ. 2007. Conservation of B class gene expression in the second whorl of a basal grass and outgroups links the origin of lodicules and petals. Proceedings of the National Academy of Sciences. 104:1081-1086.

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Publications

Sun, X., Cahill, J., Van Hautegem, T., Feys, K., Whipple, C., Novak, O., Delbare, S., Versteele, C., Demuynck, K., De Block, J., Storme, V., Claeys, H., Van Lijsebettens, M., Coussens, G., Ljung, K., De Vliegher, A., Muszynski, M., Inzé, D. Nelissen, H. (2017). Altered expression of maize PLASTOCHRON1 enhances biomass and seed yield by extending cell division duration. Nature Communications. 8:14752 doi: 10.1038/ncomms14752.
Whipple, C. J. (2017). Tansley Insight: Grass inflorescence architecture and evolution: the origin of novel signaling centers. New Phytologist 216(2):367-372. doi: 10.1111/nph.14538
Bartlett, M., Thompson, B., Brabazon, H. Del Gizzi, R., Thomspon, Z., Whipple, C. (2016). Evolutionary dynamics of floral homeotic transcription factor protein-protein interactions. Molecular Biology and Evolution 33(6):1486-1501 doi: doi:10.1093/molbev/msw031
Pickett, B.D., Karlinsey, S.M., Shiozawa, D.K., Whipple, C.J., and Ridge, P.G. (2016). SA-SSR: A suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences. Bioinformatics 1;32:2707-9 doi: 10.1093/bioinformatics/btw298
Yang, C.J., Kursel, L.E., Studer, A.J., Bartlett, M.E., Whipple, C.J., Doebley, J.F. (2016). A gene for genetic background in zea mays: fine mapping enhancer of teosintebranched1.2 (etb1.2) to a YABBY class transcription factor. Genetics 204 (4):1573-1585 DOI: 10.1534/genetics.116.194928
Kummer, T.A., Whipple, C.J., Jensen, J.L. (2016). Prevalence and persistence of misconceptions in tree thinking. Journal of Microbiology and Biology Education 17(3):389-398 doi:10.1128/jmbe.v17i3.1156.
Gallavotti, A., and Whipple, C. J. (2015). Positional Cloning in maize. Applications in Plant Sciences 3(1):1400092 doi:10.3732/apps.1400092
Bartlett, M. E., Wiliams, S. K., Taylor, Z., DeBlasio, S., Goldschmidt, A., Hall, D. H., Schmidt, R. J., Jackson, D. P., Whipple, C. J. (2015). The maize PI/GLO ortholog Zmm16/sterile tassel silky ear1 (sts1) interacts with the zygomorphy and sex determination pathways in flower development. Plant Cell 27:3081-3098 doi: dx.doi.org/10.1105/tpc.15.00679
Wills, D. M., Whipple, C. J., Takuno, S., Kursel, L. E., Shannon, L. M., Ross-Ibarra, J., Doebley, J. F. (2013). From many, one: genetic control of proflicacy during maize domestication. PLOS Genetics 9:e1003604. doi: 10.1371/journal.pgen.1003604.
Kellogg, E. A., Camara, P. S., Rudall, P., Ladd P., Malcomber, S. T., Whipple, C. J., Doust, A. N. (2013). Early inflorescence development in the grasses (Poaceae). Frontiers in Plant Science 4 doi: 10.3389/fpls.2013.00250.
Bartlett, M. E., Whipple, C. J. (2013). Protein change in plant evolution: tracing one thread connecting molecular and phenotypic diversity. Frontiers in Plant Science 4 doi: 10.3389/fpls.2013.00382.
Whipple, C. J. (2012). Defining the Plant Germline: Nature or Nurture. Science 337:301-302.
Whipple, C. J., Kebrom, T. H., Weber, A. L., Yang, F., Hall, D., Meeley, R., Schmidt, R. Doebley, J., Brutnell, T. P., and Jackson, D. P. "grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses." Proceedings of the National Academy of Sciences 108 (2011):E506-E512.
Gallavotti, A., Malcomber, S., Gaines, C., Stanfield, S., Whipple, C., Kellogg, E., and Schmidt, R. J. "BARREN STALK FASTIGIATE1 is an AT-Hook Protein Required for the Formation of Maize Ears." Plant Cell 23 (2011):1756-1771.
Whipple, C. J., Hall, D. H., DeBlasio, S., Taguchi-Shiobara, F., Schmidt, R. J., and Jackson, D. P. "A conserved mechanism of bract suppression in the grass family." The Plant Cell 22 (2010):565-578.
Chuck, G., Whipple, C., Jackson, D., and Hake, S. "The Maize SBP-box Transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries." Development. 137 (2010):1243-1250.
Thompson, B. E., Bartling, L., Whipple, C., Hall, D. H., Sakai, H., Schmidt, R. S., and Hake, S. "bearded-ear Encodes a MADS Box Transcription Factor Critical for Maize Floral Development." The Plant Cell. 21 (2009): 2578-2590.
Whipple, C. J., Zanis, M., Kellogg, E. A., Schmidt, R. J. "Conservation of B class gene expression in the second whorl of a basal grass and outgroups links the origin of lodicules and petals." Proceedings of the National Academy of Sciences. 104.3 (2007): 1081-1086.
Whipple, C. J., Schmidt, R. J. "The Genetics of Grass Flower Development." Developmental Genetics of the Flower. Advances in Botanical Research. 44 (2006): 386-417.
Whipple, C. J., Ciceri, P., Padilla, C. M., Ambrose, B. A., Bandong, S. L., Schmidt, R. J. "Conservation of B-class floral homeotic gene function between maize and Arabidopsis." Development. 131.24 (2004): 6083-6091.